Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAG---PGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS
2POE Chain:A ((15-174))
------------YFQGVRIITNYGDLKFELFCSQCPKACKNFLALSA---------------SGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGAKKPNTNGSQFFITYSSLPQLNGEYVIFGKLID--GFETLNTLENCPSDKSHKPIDEIIIKDIVIH
General information:
TITO was launched using:
RESULT:
Template:
2POE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80306 for 1203 contacts (-66.8/contact) +
2D Compatibility (PS) -16382 + (NN) -11201 + (LL) 276
1D Compatibility (HY) -14400 + (ID) 3300
Total energy: -125313.0 ( -104.17 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_2POE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2POE-query.scw
PDB file :
Tito_Scwrl_2POE.pdb
: