Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGFGLRLAEAKARRGPLCLGIDPHPELLRGWDLATTADGLAAFCDICVRAFADF-AVVKPQVAFFESYGAAGFAVLERTIAELRAADVLVLADAKRGDIGATMSAYATAWV-GDSPLAADAVTASPYLGFGSLRPLLEVAAAHGRGVFVLAATSNPEGAAVQNAAADGRSVAQLVVDQVGA-ANEAAGPGPGSIGVVVGATAPQAPDL---SAFTGPVLVPGVGVQGGRPEALGGLGG-AASSQLLP-AVAREVLRAGPGVPELRAAGERMRDAVAYLAAV
3QW3 Chain:A ((1-251))
-MSFFDLLNER-AKRSLLCVGLDPRAKTAA---------AAVEECKRLIEQTHEYAAAYKPNAAFFEFFGAEGWAALSEVIRA-VPAGIPVVLDAKRGDIADTADAYATSAFKH---LNAHAITASPYMGSDSLQPFMRY---PDKAVFVLCKTSNKGSNDLQCLRVGDRYLYEAVAERAEGPW-----NVNGNVGLVVGATDPVALARVRARAPTLWFLVPGI-----SLKASLDAGLRADGSG-MLINVSRGLARAADPRA----AAKELCEEINAI---
General information:
TITO was launched using:
RESULT:
Template:
3QW3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163914 for 2008 contacts (-81.6/contact) +
2D Compatibility (PS) -25861 + (NN) -11664 + (LL) 2152
1D Compatibility (HY) -11200 + (ID) 4200
Total energy: -214687.0 ( -106.92 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_3QW3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QW3-query.scw
PDB file :
Tito_Scwrl_3QW3.pdb
: