Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNTNPVAAWKALKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHVIDSAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDVVERVAPSVLLGRRDGLSRVDEFEQRHVHETVAILMARSSAISERIAGGSLAIVGVTYQLDDGRAVLRDHIGNIGEEV
1YM3 Chain:A ((12-214))
---TNPVAAWKALKEGNERFVAGRPQHPSQS----------QKPTAVIFGCADSRVAAEIIFDQGLGDMFVVRTAGHVIDSAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAINDGTLPGGYVRDVVERVAPSVLLGRRDGLSRVDEFEQRHVHETVAILMARSSAISERIAGGSLAIVGVTYQLDDGRAVLRDHIGNIGEE-
General information:
TITO was launched using:
RESULT:
Template:
1YM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154317 for 1591 contacts (-97.0/contact) +
2D Compatibility (PS) -21172 + (NN) -12831 + (LL) 704
1D Compatibility (HY) -26400 + (ID) 9650
Total energy: -223666.0 ( -140.58 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_1YM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YM3-query.scw
PDB file :
Tito_Scwrl_1YM3.pdb
: