Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTIPAFHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGEDLDAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPG-PLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPMPLNGSGRLLVAARLGTTRLLDNIAIEIGTFAGTDRPDGYRAILESHWRN |
3N8H Chain:A ((3-262)) | ---------AMIIADNIKQFHSIRNSL-IKQQKIGFVPTMGALHNGHISLIKKAKSEN-DVVIVSIFVNPTQFNNPNDYQTYPNQLQQDIQILASLDVDVLFNPSEKDIYPDGNLLRIEPKLEIANILEGKSRPGHFSGMLTVVLKLLQITKPNNLYLGEKDYQQVMLIKQLVKDFFINTKIIVCPTQRQPSGLPLSSRNKNLTSTDIEIANKIYEILRQDDFSNLE-------ELTNKIN-STGAKLQYIQKLN-----------NRIFLAFYIGKVRLIDNFLKETGP-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3N8H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -164096 for 2071 contacts (-79.2/contact) +
2D Compatibility (PS) -28549 + (NN) -14740 + (LL) 1548
1D Compatibility (HY) -23600 + (ID) 4750
Total energy: -234187.0 ( -113.08 by residue)
QMean score : 0.709
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