Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQVSVYRYNPD-KDAAPYMQDFQVDTNGKDVMVLDVLALIK-EQDEGFSYRRSCREGVCGSDGMNINGKNGLACITPLSAAGLKGGKLVIRPLPGLPVIRDLVVDMSIFYKQYEKVKPFLQNDTPA-P-AIERLQTPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTKTEERLASLDDPFSVFRCRGIMNCVNVCPKGLNPTKAIGHVRNMLLQSGT
2H88 Chain:B ((11-246))
IKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDL--SKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYK-
General information:
TITO was launched using:
RESULT:
Template:
2H88.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123687 for 1746 contacts (-70.8/contact) +
2D Compatibility (PS) -25136 + (NN) -17137 + (LL) 292
1D Compatibility (HY) -23600 + (ID) 6200
Total energy: -195468.0 ( -111.95 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_2H88.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H88-query.scw
PDB file :
Tito_Scwrl_2H88.pdb
: