Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKEIINVVHGTFTQLRSLVMIFGHAFRKRDTLQYPE--EPVYLPPRYRGRIVLTRDPDGEERCV-------------ACNLCAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVYEKHDLLISGPGKNPDYNYYRVAGMAIAGKPKGAAQNEAEPINVKSLLP
1PGS Chain:? ((141-314))
KYSAVVPVIQYNKSSIDGVPYGKAHTLGLKKNIQLPTNTEKAYLRTTISGWGHAKPYDAGSRGCAEWCFRTHTIAINNANTFQHQLGALGCSANPINNQSPGNW-------TPDRA---GWCPGMAVPTRIDVLNNSLTGS--TFSYEYKFQSWTNNGTNGDA---FYAISSFVIAKSN--------TPISAPVVTN
General information:
TITO was launched using:
RESULT:
Template:
1PGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53137 for 1082 contacts (-49.1/contact) +
2D Compatibility (PS) -16406 + (NN) -444 + (LL) 1616
1D Compatibility (HY) -2800 + (ID) 1400
Total energy: -72571.0 ( -67.07 by residue)
QMean score : 0.179
(partial model without unconserved sides chains):
PDB file :
Tito_1PGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PGS-query.scw
PDB file :
Tito_Scwrl_1PGS.pdb
: