Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTLGSLGNSSSSVSATFLLSGIPGLERMHIWISIPLCFMYLVSIPGNCTILFIIKTERSLHEPMYLFLSMLALIDLGLSLCTLPTVLGIFWVGAREISHDACFAQLFFIHCFSFLES-------SVLLSMAFDRFVAICHPLHYVSILTNTVIGRIGLVSLGRSVALIFPLPFMLKRFPYCGSPVLSHSYCLHQEVMKLACADMKANSIYGMFVIVSTVGIDSLLILFSYALILRTV-----LSIASRAERF--KALNTCVSHICAVLLFYTPMIGLSVIHRFGKQ-APHLVQVVMGFMYLLFP-PVMNPIVYSVKTKQIRDRVTHAFCY |
2VT4 Chain:A ((14-283)) | -------------------------------MSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP-------FGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRAR-AKVIICTVWAISALVSFLPIMMHWWRDEDPQALK---CYQDP----GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIR----------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFV--AFNWLGYANSAMNPIIYCRSPDFRKAFKRLLA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206059 for 1689 contacts (-122.0/contact) +
2D Compatibility (PS) -23565 + (NN) -2400 + (LL) 4880
1D Compatibility (HY) -26400 + (ID) 2950
Total energy: -256494.0 ( -151.86 by residue)
QMean score : 0.192
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