Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVTEFIFLGLSDSQELQTFLFMLFFVFYGGIVFGNLLIVITVVSDSHLHSPMYFLLANLSLIDLSLSSVTAPKMITDFFSQRKVISFKGCLVQIFLLHFFGGSEMVILIAMGFDRYIAICKPLHYTTIMCGNACVGIMAVAWGIGFLHSVSQLAFAVHL-PFCGPNEVDSFYCDLPRVIK----------LAC--TDTYRLDIMVIANSGVLTVCSFVLLIISYTIIL---------MTIQHCPLDKSSK-------------------ALSTLTAHITVVLLFFGP-CVFIYAWPFPIKSLDKFLAVFYSVITPLLNPIIYTLRNKDMKTAIRRLRKWDAHSSVKF |
2YDO Chain:A ((21-302)) | -------------------------------ILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICW---------VLSFAIGLTPMLGWNN-----CGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMES----------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLM-------YLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206442 for 1730 contacts (-119.3/contact) +
2D Compatibility (PS) -23582 + (NN) -6530 + (LL) 4240
1D Compatibility (HY) -27200 + (ID) 3450
Total energy: -262964.0 ( -152.00 by residue)
QMean score : 0.163
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