Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNGDHMVLGSSVTDKKAIILVTILLLLRLVAIAGNGFITAALGVEWVLRRML-LPCDKLLVSLGASRFCLQSVVMGKTIYVFLHPMAFPYNPVLQFLAFQWDFLNAATLWSSTWLSVFYCVKIATFTHPVFFWLKHKLSGWLPWMLFSSVGLSSFTTILFFIGNHRMYQNYLRNHLQPWNVTGDSIRSY--CEKFYLFPLKMITWTMPTAVFFICMILLITSLGRHRKKALLTTS----------------------------------------------------------------------------------------------------------------------------------------------------GFREPSVQAHIKALLALLSFAMLFISYFLSLVFS-AAGIF-----PPLDFKFWVWESVIYLCAAVHPIILLFSNCRLRAVLKSRRSSRCGTP |
| 3V2Y Chain:A ((61-495)) | --------------NSIKLTSVVFILICCFIILENIFVLLTIWK----TKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGA-TTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLK---------NNFRL---FLLISACWVISLILGGLPIMGWNC---------IS-A--LSSCSTVLPLYHKHYIL-FCTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V2Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -208288 for 1963 contacts (-106.1/contact) +
2D Compatibility (PS) -28025 + (NN) -13642 + (LL) 2392
1D Compatibility (HY) -16800 + (ID) 1400
Total energy: -265763.0 ( -135.39 by residue)
QMean score : 0.284
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