Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWMAGMLYLPRLYVYHATVKPGSESDSLLQTMERRFLRYIINPAMLFSLSFGIALMIIR-----EA-YR--EGWFHVKALALF-FMFGIHGLLAMHRKKFAMGSNEKNHVYFRVLNEMVTVLIIIIVIMIVVKPF
1KQF Chain:C ((112-173))
--------------------------------GQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESE
General information:
TITO was launched using:
RESULT:
Template:
1KQF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26367 for 267 contacts (-98.8/contact) +
2D Compatibility (PS) -5317 + (NN) -2339 + (LL) 2568
1D Compatibility (HY) -4800 + (ID) 400
Total energy: -36655.0 ( -137.28 by residue)
QMean score : 0.014
(partial model without unconserved sides chains):
PDB file :
Tito_1KQF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KQF-query.scw
PDB file :
Tito_Scwrl_1KQF.pdb
: