Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRESDQCNEESNRQSTTHIHVYNRSLDFLGYLLLRYCIDSLLVRCGHTIVIYGNTTNQSRENKKKDSEDSRKLLALGIVAAVVCVGFPC
3J2W Chain:E ((30-45))
--------------------------------------------------------------------------VAALILIVVLCVSFSR
General information:
TITO was launched using:
RESULT:
Template:
3J2W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5846 for 54 contacts (-108.3/contact) +
2D Compatibility (PS) -1591 + (NN) -1238 + (LL) 4368
1D Compatibility (HY) -2400 + (ID) 300
Total energy: -7007.0 ( -129.76 by residue)
QMean score : -0.051
(partial model without unconserved sides chains):
PDB file :
Tito_3J2W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J2W-query.scw
PDB file :
Tito_Scwrl_3J2W.pdb
: