Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGSKSAFNSLDPALLYKGDLLRRMLFTLIALICYRLGTYVPIPGINLDIINDIFPKEGAGIFGVFNLFSGGALARM-TILVLNVMPYIVASIVMQLLSSAVKGINEVKNDGELGRRRMNSYIRYMTIVFCIFQSVTILIGLERMNREGTLVVIEPGVMFRTVGIFSLLGGTMFLIWLGEQISASGIGNGISLIIFTGIISELHNAFSFLLTLNKNGSMSLLI---------ILFVFVLFFLLLLLIIFVESSYRKVTVQYPKKQFKRLHSDDFTYIPLKINLSGVIPTIFANAILLT-----------PVSIANFYKGHAFSDFILNYFMA------------NKVVYIAAYLALIVFFNFFYTNFI-FNPEENADFLKKNGGFIPGRRPGKHTSDYLQDIVFKLTFIGSAYLVVICTVPEVMRYYYDMPFIFGGTSLLIIVNVTTDTIMQIQSYIFSNRYDSWIKKYESKTKKLR |
1RH5 Chain:A ((49-410)) | ---------------------------------------------------------GAQIPAIFEFWQTITASRIGTLITLGIGPIVTAGIIMQLLVGS--GIIQMDLSIPENRALFQGCQKLLSIIMCFVEAV-LFVG------AGAFGILTPLLAFLV--IIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTI-----FVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK----GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRI-----------SEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGA------LGGGTGVLLTVSIVYRMYEQLLRERT------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RH5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -355417 for 2486 contacts (-143.0/contact) +
2D Compatibility (PS) -32337 + (NN) 2545 + (LL) 6772
1D Compatibility (HY) -36400 + (ID) 3950
Total energy: -418787.0 ( -168.46 by residue)
QMean score : 0.248
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