Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALSDSIGDFLARIRNAQLAMHKTTRVLFSKVNSSILKILKDEGYILDYQKEVVGNIPSFVVKLKYYER--------SPVISDIVRVSKPGCRCYSKYKDISKAYNGLGIFIISTSKGVMTDYDAHKLKFGGEILCRVF
1FKA Chain:H ((3-138))
---TDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW
General information:
TITO was launched using:
RESULT:
Template:
1FKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87397 for 931 contacts (-93.9/contact) +
2D Compatibility (PS) -13386 + (NN) 1356 + (LL) 528
1D Compatibility (HY) -10800 + (ID) 3000
Total energy: -112699.0 ( -121.05 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_1FKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FKA-query.scw
PDB file :
Tito_Scwrl_1FKA.pdb
: