Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESSVINQSEKVTKPAIDLFGCLYATGRRKESAARVWIKSGSGKFSVNQQDKLLSYFKRESVCQIVKMPLIVTSTLDKYDVFATVKGGGLSGQAGALAHGISKALSKISQDLYSILRKSGYLTRNSCVKERKKYGQRGARAKYQFSKR
1IBL Chain:I ((5-128))
-----------------------YGTGRRKEAVARVFLRPGNGKVTVNGQD-FNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR
General information:
TITO was launched using:
RESULT:
Template:
1IBL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42858 for 908 contacts (-47.2/contact) +
2D Compatibility (PS) -12642 + (NN) 644 + (LL) 1704
1D Compatibility (HY) -4400 + (ID) 2750
Total energy: -60302.0 ( -66.41 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_1IBL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IBL-query.scw
PDB file :
Tito_Scwrl_1IBL.pdb
: