Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDVELP----YIEKRSQDVGITINAASNVSDVGKAFPGQPSIAHDSDIEGLKRLATAMKKNGAKALVQIHHGGAQALPELIPDGDVVAPSPISLKSFGQKQEHSA---------REMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWA----NQYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSP-----EEAES-PGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK |
| 1VJI Chain:A ((23-349)) | -------------------LSHRVVLAPLTRQRS-----YGNVPQPHAAIYYSQRTTPGGFLITEATGVSDTAQGYQDTPGIWTKEHVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNSGFQPNGK--APISCSDKPLMPQIRSNGIDEALFTPPRRLGIEEIPGIVNDFRLAARNAMEAGFDGVEIHGANGYLIDQFMKDTVNDRTDEYGGSLQNRCKFPLEIVDAV--AKEIGPDR---VGIRLSPFADYMESGDTNPGALGLYMAESLNKYG---ILYCHV--IEARM----------HTLMPMRKAFKGT--FISAGG-FTREDGNEAVSKGRTDLVAYGRWFLANPDLPKRFQ---VDAPLNKYD----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VJI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124821 for 2539 contacts (-49.2/contact) +
2D Compatibility (PS) -31596 + (NN) -16259 + (LL) 3228
1D Compatibility (HY) -19200 + (ID) 5400
Total energy: -194048.0 ( -76.43 by residue)
QMean score : 0.535
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