Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDKTLQQIDKLICSWLKQIDNVIPQLIMEMTTETKRHRFDLVTNVDKQIQQQFQQFLATHFPEHQLLAEEKSNEMITNEINHLWIMDPIDGTANLVKQQEDYCIILAYFYEGKPMLSYVYDYPHKKLYKAIRGEGAFCNGIKMEEPPSLKLEDAIISFNAQV-MNLDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHINTNPKPWDIAAQFLFAELLNLKMTTLDGKAIDHLKGAPFIISNKACHETVLKILNANGGYQKYR
2P3V Chain:A ((9-240))
---KLLRKVGHLLMIHWGRVDNV----------EKKTGFKDIVTEIDREAQRMIVDEIRKFFPDENIMAEEG----IFEKGDRLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKLGVVHAPALNETLYAEEGSGAFFNGERIRVSENASLEECVGSTGSYVDFTGKFIERMEKRTRRIRILGSAALNAAYVGAGRVDFFVTWRINPWDIAAGLIIVKEAGGMVTDFSGKEANAFS-KNFIFSNGLIHD----------------
General information:
TITO was launched using:
RESULT:
Template:
2P3V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143366 for 1989 contacts (-72.1/contact) +
2D Compatibility (PS) -24827 + (NN) -8236 + (LL) 2376
1D Compatibility (HY) -14000 + (ID) 3350
Total energy: -191403.0 ( -96.23 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_2P3V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P3V-query.scw
PDB file :
Tito_Scwrl_2P3V.pdb
: