Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MENHLHADTNTDDKSTKIVRLFGLIGGALIALIIYYALDAQMPHIVEEIPKLSSLNYKAMPVVAGVAVLMGIWWMTEAIDLPATALLPLVLFNVFSVDQFSSVSASYASPIIFLFMGGFILALSMQKWNLHTRIALSIILLVGTSPRRLILGFMIATGFLSMWVSNTATAVMMFPVGMSVLQLVAKLVGKENASNAFYQKEEITKAHGGIMSNIVHKGKDIAQVIQEKTTIYRTNFSICLMLGIAYSASIGSLGTLIGTPPNALLAGYMKTAFNIEIDFAQWMVFGTPLAFIMLILAWLLLTYVIFPLKIKEIPGGKEVVKSELKKLRRLSQAEISVGVIFILASLGWIFLDTILKSWGIKIDKIDSVIAMGVSALLFILPANHQGDRLIDWGVAKKLPWDVLLLFGGGLALSAQFSKTGLSLWIGHLVSGFSHLPILFIIVMVTLMVIFLTEITSNTATAAAFLPVIGGVAMGMGYESHQSLLLTIPVALSATCAFMLPVATPPNAIAYGSGYVKITDMIKAGLWLNLVGVVLISAFSYCLVSLIFN |
2R28 Chain:D ((5-23)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KEVIRNKIRAIGKMARVFS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2R28.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 5574 for 69 contacts (80.8/contact) +
2D Compatibility (PS) -2063 + (NN) -1795 + (LL) 44268
1D Compatibility (HY) -1600 + (ID) 150
Total energy: 44234.0 ( 641.07 by residue)
QMean score : 0.652
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