Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSKKLYLALIIGVLLAFLTLSSWLGNSGLVGRFGVWFAAINKKYFGYLSLINLPYLAWVLFLLYRAKNPFTEIVLEKTLGHLLGILSLLFLQSSLLNQGEIGNSARLFLHPFIGDFGLYVLIMLMVVISYLILFKLPPKSVFYPYMNKTQSLLKEIYKQCLQAFSPNFSLKKEGFENTPSDSQKKETNNDKEKENLKENPIDENHNTPNEESFLAIPTPYNTTLNNSEPQEGLVQISPHPPTHYTIYPKRNRFDDLTNPTLKEPKQETKEREPTLKKETPTTLKPIMPISASNTENHDKTENHKTPNHPIKEDDLQESPQENPQKENIEENIEEKETQNAPSFSPLTLTSAKKPVMVKELSENKEILDGLDYGEVQKPKDYELPTTQLLNAVCLKETSLDENEIDQKIQDLLSKLRTFKIDGDIIRTYSGPIVTTFEFRPAPSVKVSRILGLSDDLAMTLCAESIRIQAPIKGKDVVGIEIPNSQSQIIYLREILESELFQKSSSPLTLALGKDIVGNPFITDLKKLPHLLIAGTTGSGKSVGVNAMILSLLYKNPPDQLKLVMIDPKMVEFSIYADIPHLLTPIITDPKKAIGALQSVAKE-MERRYSLMSEYKVKTIDSYNEQAQSNGVEAFPYLIVVIDELADLMMTGGKEAEFPIARIAQMGRASGLHLIVATQRPSVDVVTGL---IKTNLPSRVSFRVGTKIDSKVILDTDGAQSLLGRGDMLFTP-PG-------TNGLVRLHAPFATEDEIKKIVDFIKAQKEVEYDKDFLLEESRMPLDTPNYQGDDILERAKAVILEKKITSTSFLQRQLKIGYNQAATITDELEAQGFLSPRNAKGNREILQNF |
4LYA Chain:A ((79-298)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFGSAGYGKSTTMMTLLLSFAGAYNPAQLHYYIFDFGNSALLPLRQLPHTADYFRLDDEKKIEKFIKFMKEEMEQRKQRFMEKEVSTIKLYNALSE----EKLPIIIVALDNF-DVVKEEMPDFETQLIQYARDGQSLGIFFIMTATR-----VSGIRPPLMNNLKTKI---------VHYFIDSSEKFSLIGRTPYDVDPIPGRALIKKDNAALTQIYLPADGEDDI-EVLENVKREMERLKEVYQHIPKPKPIPMLPPRLSMSVFTNTYVQHRASGFIPVGLDEQTVRPVAINMRTDPHCLIVGQSRKGKTNVVKVILESLL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LYA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122506 for 1524 contacts (-80.4/contact) +
2D Compatibility (PS) -22888 + (NN) -8698 + (LL) 33480
1D Compatibility (HY) -14400 + (ID) 2950
Total energy: -137962.0 ( -90.53 by residue)
QMean score : 0.388
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