Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNHDLESIKQAALIEYEVREQGSSDVLDSNISKEPLEFIIGANQIIVGLEKAVLKAQIGEWEEIVIAPEEAYGVYESGYLQEVPRDQF-EGIELEKGMSVFGQTEDNQTIQATIKDFSNTHVMVDYNHPLAGKTLAFRFKVLGFREVSEEEILASHHDSGTGCCGGHGGHGGKKGGGCGCSCSHG
4ODK Chain:A ((10-144))
-------TIRYTLQVEGEVLDQGE------------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQD---NPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREATPEELLHGHAHPSGHHHH--------------------
General information:
TITO was launched using:
RESULT:
Template:
4ODK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58867 for 811 contacts (-72.6/contact) +
2D Compatibility (PS) -13590 + (NN) 1856 + (LL) -232
1D Compatibility (HY) -6800 + (ID) 2300
Total energy: -79933.0 ( -98.56 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_4ODK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ODK-query.scw
PDB file :
Tito_Scwrl_4ODK.pdb
: