Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LAEGLRTIYFVRHGKTEWNMTGQMQGWGDSPLVAEGIDGAKAVGEVLKDMQIDA--VYTSTSKRTQDTAAYILGDREIEIQPLEELKEMGFGTWEGIRVTEIDEKHPEERAKILHSPETYKAEVNGGETYYELAERLLEGVEKIIAD-NPNGNILVVSHGMSLTLLL-YLLQGGTIEDHRKEAPRILNTSISIVEYQNGEFSLKKINEIGHLDLK
1K6M Chain:A ((213-372))
-----RSIYLCRHGESELNIRGRI--GGDSGLSVRGKQYAYALANFIQSQGISSLKVFTSRMKRTIQTAE-ALG---VPYEQFKALNEIDAGVCEEMTYEEIQEHYPEEFA--LRDQDKYRYRYPKGESYEDLVQRL----EPVIMELERQENVLVICHQAVMRCLLAYFLDKSSEE--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1K6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35565 for 1161 contacts (-30.6/contact) +
2D Compatibility (PS) -17159 + (NN) -7231 + (LL) 3620
1D Compatibility (HY) -13600 + (ID) 2850
Total energy: -72785.0 ( -62.69 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_1K6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K6M-query.scw
PDB file :
Tito_Scwrl_1K6M.pdb
: