Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVSRKQSIQKTQLSKTKKQTLNVTIDRPIG--YTDKFGNV---YPLNYGFVEGVIGGDGEEQDVYVLSRKISEPIDTFQGDLIAVITRNDDV-EDKWVVAAPNENFTIEEIREK-------------VHFIEQYFDSEIKLI
2EIP Chain:A ((32-148))
------------------------IDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTD--GEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLE----
General information:
TITO was launched using:
RESULT:
Template:
2EIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16129 for 512 contacts (-31.5/contact) +
2D Compatibility (PS) -9773 + (NN) -4554 + (LL) 2856
1D Compatibility (HY) -4000 + (ID) 1550
Total energy: -33150.0 ( -64.75 by residue)
QMean score : 0.352
(partial model without unconserved sides chains):
PDB file :
Tito_2EIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EIP-query.scw
PDB file :
Tito_Scwrl_2EIP.pdb
: