Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDVRLINGIALAFEGDAVYSLYIRRHLIMQGFTKPNQLHRKATQYVSANAQALLINAMLEENILTDEEQLIYKRGRNANSHTKAKNADIITYRMSTGFEALMGYLDMTGQIKRLETLIQWCIETIEK
2GSL Chain:A ((8-127))
-KDIRDYSGLELAFLGDAIWELEIRKYYLQFG-YNIPTLNKYVKAKVNAKYQSLIYKKII--NDLDEEFKVIGKRAKN--IKTFPRSCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIKGEL-
General information:
TITO was launched using:
RESULT:
Template:
2GSL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52933 for 866 contacts (-61.1/contact) +
2D Compatibility (PS) -12474 + (NN) -3305 + (LL) 664
1D Compatibility (HY) -10000 + (ID) 1650
Total energy: -79698.0 ( -92.03 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_2GSL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GSL-query.scw
PDB file :
Tito_Scwrl_2GSL.pdb
: