Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELLLALLLWNILVFATYAIDKRRAIRGAWRISEKTLLI------ESLLLGGFGAFLGGEVFRHKTTKWYFRLVWYIGMIIDLAIIWLIWCY
4YL8 Chain:B ((5-43))
-------------------EFRNKRATRGTYSPSAQEYNVLKPPPEERLI-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YL8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3155 for 88 contacts (35.9/contact) +
2D Compatibility (PS) -2175 + (NN) 2862 + (LL) 6724
1D Compatibility (HY) -1200 + (ID) 350
Total energy: 9016.0 ( 102.45 by residue)
QMean score : -0.404
(partial model without unconserved sides chains):
PDB file :
Tito_4YL8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YL8-query.scw
PDB file :
Tito_Scwrl_4YL8.pdb
: