Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGDKLKGTVTGIRPYGAFVSLED--GRTGLIHISEIKTGYIDNIYDVLSVGDEVYVQVIDVDEFTQKASLSLR--TLEEERHHIQH--RHRFSNNRLKIGFKPLEENL-PSWVEEGLAYLNNK
3AEV Chain:A ((12-124))
---GEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLRLAAEKLGKDFEAAWREVWVPLEEEW
General information:
TITO was launched using:
RESULT:
Template:
3AEV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32054 for 640 contacts (-50.1/contact) +
2D Compatibility (PS) -11028 + (NN) -1813 + (LL) 476
1D Compatibility (HY) -8400 + (ID) 1800
Total energy: -54619.0 ( -85.34 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_3AEV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AEV-query.scw
PDB file :
Tito_Scwrl_3AEV.pdb
: