Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEYDQINSYLVDIFNRIMIIEEMSLKTSQ---FSDVSLKEMHTIEIIGKHSE--VTPSDVARELMLTLGTVTTSLNKLEKKGYIERKRSSIDRRVVHLSLTKRG-RLLDRLHSKF---HKSMVSHIIEDLGEEDIKMLTSALGNLHKFLEDLV
4L9T Chain:A ((11-139))
-----------------MISHEMKQKADQKLEQLDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQH------
General information:
TITO was launched using:
RESULT:
Template:
4L9T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28149 for 692 contacts (-40.7/contact) +
2D Compatibility (PS) -12609 + (NN) -4957 + (LL) 2064
1D Compatibility (HY) -4800 + (ID) 1950
Total energy: -50401.0 ( -72.83 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_4L9T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L9T-query.scw
PDB file :
Tito_Scwrl_4L9T.pdb
: