Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKVAFLFAGQGAQKLGMARDLYETFPIVKETFDKASHVLGYDLRELI-DKDLDKLNQTKYTQPAILTTSTAIYRLILKEIEL-RPDMVAGLSLGEYSALVASGAIRFEDAVVLVARRGQLMEAAAPAGSGKMVAVLNADRQIIEDACKKASQFGIVSPANYNTPKQIVIGGESIAVNAAVEELKQQGVKRLIPLNVSGPFHTALLKPASQKLSDVLDKVHFSVSEIPVIGNTEAQIMKKDD---IKSLLARQVMEPVRFDESIETMKKMGMTQVVEIGPGKVLSGFLKKIDSSLSVHSVEDKIGFNNLKELN |
3HJV Chain:A ((7-312)) | -SKFAIVFPGQGSQAVGMLADLAEQYAVVKQTFAEASEVLGYDLWALVQDGPVEDLNQTFRTQPALLAASVAIWR-VWQQLGLEQPAVLAGHSLGEYSALVCAGVIDFKQAIKLVELRGQLMQQAVPAGTGAMYAIIGLEDEAIAKACADAAQGEVVSPVNFNSPGQVVIAGQKDAVERAGVLCKEAGAKRALPLPVSVPSHCALMKPAADELAKTLAELEFNAPQIPVINNVD--VVAETDPVKIKDALIRQLYSPVRWTECVEQMSAQGVEKLIEMGPGKVLTGLTKRIVKTLEGVAVNDVASLDAVK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HJV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -183757 for 2712 contacts (-67.8/contact) +
2D Compatibility (PS) -32656 + (NN) -16210 + (LL) 848
1D Compatibility (HY) -27200 + (ID) 6900
Total energy: -265875.0 ( -98.04 by residue)
QMean score : 0.625
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