Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEIKIRSIPEKTWAQLHMISEEYEYPSFNEFMLAQLQRIVENGGLDLYDNKFAETLAVIKEQQAQILDQLLKNEIKLLAYHAKQDIVEEL--------TTDWLRFMDDVDALAAERGAGGR
2NYY Chain:A ((260-315))
-------------------------------------------------------EELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYLLSEDTS
General information:
TITO was launched using:
RESULT:
Template:
2NYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3203 for 197 contacts (-16.3/contact) +
2D Compatibility (PS) -4946 + (NN) -1602 + (LL) 4568
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -10433.0 ( -52.96 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_2NYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NYY-query.scw
PDB file :
Tito_Scwrl_2NYY.pdb
: