Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEFIANGRVASIPDDAVGRTANGHVSFKFEFVCDSSQQDQEGKGLPAFFHVQVYGK-QAEIMAQSLSKGLPILIKGEIIQRPYTNQQGQRRTFQYISPSQ----HDGITFLESKEATKKRKQGRFTSQAVTSPTLAYSEPVDADEPF
3PGZ Chain:A ((26-136))
LNKVILIGNLGADP--EIRRLNSGDQVANLRIATSESWRDR--KERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGEL---QMLD-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3PGZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48698 for 636 contacts (-76.6/contact) +
2D Compatibility (PS) -11003 + (NN) -2141 + (LL) 1588
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -65704.0 ( -103.31 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_3PGZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PGZ-query.scw
PDB file :
Tito_Scwrl_3PGZ.pdb
: