Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MIIFV-------SLKKFVQTFWWLIAAIALYVFYQSIG---LNMFFLLIIGLLALKFVPALVLPILFIALGVYFSGGFSFMADL---IILFFWGLVSLP-ICFAFAESVRTSIERKR---
1U6T Chain:A ((1-121))
VIRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLTAPPGSKEAEVQAKQQALEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
1U6T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148747 for 661 contacts (-225.0/contact) +
2D Compatibility (PS) -10704 + (NN) -773 + (LL) 0
1D Compatibility (HY) 3600 + (ID) 800
Total energy: -157424.0 ( -238.16 by residue)
QMean score : 0.253
(partial model without unconserved sides chains):
PDB file :
Tito_1U6T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U6T-query.scw
PDB file :
Tito_Scwrl_1U6T.pdb
: