Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKIISLGEVLLRLSPPQYHTLMQANHLKCQFGGSELNVLASLAQLGHHVGLVSALPDNDLGKMARQFILSQQISPAAI-IKKEGRLGIYYYEQGFSVR-TNKVIYDRNYSSFWESTLSDYDFTSIF-KGVDWFHVSGITPALTKDLYEVTRFLMTKAKEGGVKVSIDLNFRESLWSSFQEAREQLSPLLGLLDVCFGLEPIYLAGESEDLKDELGLSRPYLDIELLEKITQKIVQEYGLDYIAFTQREMEYTNQYMLKSYLYHNNMLYQTDKTGVEVLDRVGTGDAFAAGLIHALLEKETPQRALEIAMATFKYKHTIQGDINIMTRDDIAYLIEKETNDIKR |
| 2VAR Chain:A ((2-294)) | -VDVIALGEPLIQFNSFNPGPLRFVNYFEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKSELVYYRKGSA--GSRLSPEDINENYVRNSRLVHSTGITLAISDNAKEA----VIKAFELAKSRSLDTNIRPKLWSSLEKAKETILSILKKYDIEV------LITDPDDTKILLDVTDP-------DEAYRK-YKELGVKVLLYKLGSK--------GAIAYKDNVKAFKDAYKVPVEDPTGAGDAMAGTFVSLYLQGKDIEYSLAHGIAASTLVITVRGDNELTPTLEDAERFLNEFK---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2VAR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -114379 for 2674 contacts (-42.8/contact) +
2D Compatibility (PS) -31266 + (NN) -10408 + (LL) 3576
1D Compatibility (HY) -16400 + (ID) 3800
Total energy: -172677.0 ( -64.58 by residue)
QMean score : 0.416
|
|
|