Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIWTNLGRFAFIETEHVNLRPVAYTDREAFWRIASKRTNLQFIFPVQTSKKESDFLLVHSFMKEPLGVWAIEDKVSHKMFGVIRFENIDLSKKTAEIGYFLKESSWGQGIMTECLKTLSFFAFQEFG----MDKLIIVTHKENIASQKVALKAHFKQSRSFKGSDRYTRRIRDYIEFQLTRGDYRYE
3R9G Chain:A ((84-161))
--------------------------------------------------------------------------KYKTKIAGVVSFNIIDHANKTAYIGYWLGANFQGKGIVTNAINKL----IQEYGDSGVIKRFVIKCIVDNKKSNATALRCGFTLEGVLQKAEILNGVSYDQNIYSKVI------
General information:
TITO was launched using:
RESULT:
Template:
3R9G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46688 for 454 contacts (-102.8/contact) +
2D Compatibility (PS) -7988 + (NN) -424 + (LL) 6944
1D Compatibility (HY) -6000 + (ID) 1400
Total energy: -55556.0 ( -122.37 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_3R9G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R9G-query.scw
PDB file :
Tito_Scwrl_3R9G.pdb
: