Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLYVQLMVILTFSFAGEVLSTIFNLPVPGSIIGLILLFLALKYKIIRLRHIDAVGNFLLANMTILFLPPAVGLMEHFQDIKPYLFGIAIIILGALFLNILTIGLVSQWIKKRYEGDYPEIGGKNGNFNE
2OKR Chain:C ((2-14))
-----------------------------------------------KIKKIEDASNPLLLKRRKKARAL------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2OKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2534 for 38 contacts (-66.7/contact) +
2D Compatibility (PS) -1216 + (NN) 1237 + (LL) 9920
1D Compatibility (HY) -800 + (ID) 200
Total energy: 6407.0 ( 168.61 by residue)
QMean score : -0.290
(partial model without unconserved sides chains):
PDB file :
Tito_2OKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKR-query.scw
PDB file :
Tito_Scwrl_2OKR.pdb
: