Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQYSEIMIRYGELSTK-KKNRMRFINKLKNNMEHVLSIYPDVSVKTDRDR-GHVYLNGTDYHEVAESLKEIFGIQAFSPSFKVEKNVD----TLVKAVQEIMTSVYKDGMTFKITAKRSDHSFELDSRALNHTLGDAVFSVLPNIKAQMKQPDINLKVEIRDEAAYISYENIRGAGGLPVGTSGKGMLMLSGGIDSPVAGYLALKRGVDIEAVHFASPPYTSPGALKKAHDLTRKLTKFGGNIQFIEVPFTEIQEEIKEKAPEAYLMTLTRRFMMRITDRIRENRNGLVIINGESLGQVASQTLESMQAINAVTATPIIRPVVTMDKLEIIDIAQKIDTFDISIQPFEDCCTIFAPDRPKTNPKIKNTEQYEKRMDVEGLVERAVAGIMVTTIQPQADSDDVDDLIDDLL |
| 1VBK Chain:B ((4-211)) | -----VIVRY-----KSRQTRSWFEKILMNNIREAL-VTEEVPYKEIFSRHGRIIVKTNSPKEAANVLVRVFGIVSISPAMEVEASLEKINRTALLMFRKKAKEVGKERPKFRVTARRITKEFPLDSLEIQAKVGEYILNN-ENCEVDLKNYDIEIGIEIMQGKAYIYTEKIKGWGGLPIGTEGRMIGILHDEL-SALAIFLMMKRGVEVIPVYIGKDDKNLEKVRSLWNLLKRYSYGSKGFLVVAESFDRVLKLIRDFGVKGVIKGLRPVSEITEDFKMFPVPVYYPLIALPEEYIKSVKERLGL-------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VBK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -100608 for 1475 contacts (-68.2/contact) +
2D Compatibility (PS) -20563 + (NN) -4532 + (LL) 8536
1D Compatibility (HY) -16800 + (ID) 3150
Total energy: -137117.0 ( -92.96 by residue)
QMean score : 0.474
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