Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKNTWKKLLVSTAALSVVAGGAIAATHSNSVDAASKTTIKLWVPTDSK-ASYKAIVKKFEKENKGVTVKMIESNDSKAQENVKKD-PS-KAADVFSLPHDQLGQLVESGVIQEIPEQYSKEIAKNDTKQSLTGAQYKGKTYAFPFGIESQVLYYNKTKLTADDVKSYETI---------TSKGKFGQQLKAANSYVTGPLFLSVGDTLFGKSGEDAKGTNWGNEAGVSVLKWIADQKKND-GFVNLTAEN--TMSKFGDGSVHAFESGPWDYDAAKKAVGEDKIGVAVYPTMKIGDKEVQQKAFLGVKLYAVNQAPAGSNTKRISASYKLAAYLTNAESQKIQFEKRHIVPANSSIQSSDSVQKDELAKAVIEMGSSDKYTTVMPKLSQMSTFWTESAAILSDTYSGKIKSSDYLKRLKQFDKDIAKTK |
| 4HW8 Chain:A ((37-376)) | -------------------------------KDKPNQLT--MWVDGDKQMAFYKKITDQYTKKT-GIKVKLVNIGQNDQLENISLDAPAGKGPDIFFLAHDNTGSAYLQGLAAEI--KLSKDELKGFNKQALKAMNYDNKQLALPAIVETTALFYNK-KLVKNAPQTLEEVEANAAKLTDSKKKQYGMLFDAKNFYFNYPFLFGNDDYIFKKNGSEYDIHQLGLNSKHVVKNAERLQKWYDKGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKD-LGVTTLPT----DGGKPMKPFLGVRGWYLSEY-----SKHKYWAKDLMLYITSKDTLQKYTDEMSEITGRVDVKSSNPNLK------VFEKQA--RHAEPMPNIPEMRQVWEPMGNASIFISNGKNPKQALDEATNDITQNIKILH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HW8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -45484 for 2656 contacts (-17.1/contact) +
2D Compatibility (PS) -35131 + (NN) -16304 + (LL) 3308
1D Compatibility (HY) -16800 + (ID) 4700
Total energy: -115111.0 ( -43.34 by residue)
QMean score : 0.338
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