Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLNDNNQKKWKNRTLTSSMEFAVTGIFTAFKEERNMRKHLVSAILVILAGLTFQVSMVEWLFLLLSIFLVITFEIINSAIENVVD-LASNYHFSMLAKNAKDMAAGAVLVVSLFAVLVGLIIFIPKILALLL
4CK0 Chain:A ((25-125))
---------------------YSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDACTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYH--ELSGRAKDLGSAAVLIAIIDAVITWCILLWSHF-----
General information:
TITO was launched using:
RESULT:
Template:
4CK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69381 for 617 contacts (-112.4/contact) +
2D Compatibility (PS) -10476 + (NN) -7264 + (LL) 1628
1D Compatibility (HY) -13200 + (ID) 1650
Total energy: -100343.0 ( -162.63 by residue)
QMean score : 0.235
(partial model without unconserved sides chains):
PDB file :
Tito_4CK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CK0-query.scw
PDB file :
Tito_Scwrl_4CK0.pdb
: