Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIEITWTVKYITEFIATAFLIILGNGAVAN---------VDLKGTKGNNSGWIIIAIGYGLGVMMPALMFGNVSGNHINPAFTLGLAFSGLFPWAHVGQYILAQILGAMFGQLVVVMVYQPYFVKTENPNHVLGSFSTISALDDGQKSSRKAAYINGFLNEFVGSFVLFFGALALTKNYFGVELVGKLVQAGYDQTTAATRISPYVTGSLAVAHLGIGFLVMTLVASLGGPTGPALNPARDLGPRIVHRLLPKQILGQAKEDSKWWYAWVPVLAPIVASILAVALFKLLYL |
2D57 Chain:A ((41-253)) | ------------EFLAMLIFVLLSVGSTINWGGSENPLPVDM----------VLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTA----------------GHGLLVELIITFQLVFTIFA---------------------SCDSKRTD--VTGSVALA---IGFSVAIGHLFAINYTGASMNPARSFGPAV--------IMGN------WENHWIYWVGPIIGAVLAGALYEYVFC |
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General information:
TITO was launched using:
| RESULT:
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Template: 2D57.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167615 for 1852 contacts (-90.5/contact) +
2D Compatibility (PS) -21161 + (NN) -6005 + (LL) 4480
1D Compatibility (HY) -21600 + (ID) 3550
Total energy: -215451.0 ( -116.33 by residue)
QMean score : 0.268
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