Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKMTINDIAQLSKTSKTTVSFFLNQKFEKMSDETRQRIQEVIDETGYRPSTIARSLNSKKTKLLGVLIGDITNTFSNQIVKGIEHITKQKGYQIIVGNSNYDAKSEEDYIENMLNLGVDGFIIQPTSNFRKYSRILKEKKK-PMVFFDSQLYEHKTSWVKA---NNYDAVYDMTQECLNRGYKKFIMITADTSLLSTRIERASGFMDALKDNGFGY-DTLVIEDDDHSKSDIEDFLKAVVPDKEETLVFAPNCWALPMVFTAMKNLNFDMPR-VGLVGFDNIEWTDFSSPKVSTIVQPAYEEGEQVAQILINRIEGDDSVDNQQIVDCQMFWKESTF |
| 1JH9 Chain:A ((2-308)) | -----TIKDVAKRANVSTTTVSHVIN-KTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDRG--EAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLE-RNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JH9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144172 for 2532 contacts (-56.9/contact) +
2D Compatibility (PS) -32955 + (NN) -15239 + (LL) 1080
1D Compatibility (HY) -17200 + (ID) 4150
Total energy: -212636.0 ( -83.98 by residue)
QMean score : 0.545
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