Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSRKKDKLVLRLTTTLLVFGLGGVWFYNYKNDNVEPTVTSASDQTTTFIQTISPTAIEISKTYDLYASVLLAQAILESSSGQSDLSKAPNYNLFGIKGEYKGKSVQMPTLEDDGKGNMTQIQAPFRAYPNYSASLYDYAELVSSQKYASVWKSNTSSYKDATAALTGLYATDTAYASKLNQIIETYSLDAYDK |
2VFN Chain:A ((399-441)) | ----------------------------------------------------------------------------IRSTDGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPD |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VFN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -279 for 181 contacts (-1.5/contact) +
2D Compatibility (PS) -4768 + (NN) -3789 + (LL) 5820
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -5716.0 ( -31.58 by residue)
QMean score : 0.358
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