Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKAISIFPKEFGFFPYIFLVYTIMPFLSLLKESGVKQGIGYGMLLLFVAAYRQLFCSVGKASFTYWLIVQMAVILMYSVFYNITYIYLGFFPANFVGYYKEKTNFNRAFCALIFILLFPCLYQFIANSVSLRELFSVLPFLVIMLISPFGIRSMFRRIELEAKLAQANEQIKELSKREERVRIARDLHDTLGHTLSLLTLKSQLIQRLAASDPERTKLEAKEMETSSRSALKQVRELVSDMRTVTITEELVNIQHILRAGNITFQYEGADDFSVISPVTQNIISMCMREAVTNIIKHSKATHCAITISQFADKMRIVIRDDGKGAPKEKMF--GNGLWGMEERLMLIEGGLTVSDHNGTVVALTIPLIKKAE
3GIE Chain:B ((15-214))-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ANERIAELVKLEERQRIARDLEDTLGQKLSLIGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSMK-IRLKDELINIKQILEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENSFSKGHGLLGMRERLEFANGSLHIDTENGTKLTMAIP------


General information:
TITO was launched using:
RESULT:

Template: 3GIE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 681 -51228 -75.22 -260.04
target 2D structure prediction score : 0.76
Monomeric hydrophicity matching model chain B : 0.61

3D Compatibility (PKB) : -75.22
2D Compatibility (Sec. Struct. Predict.) : 0.76
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.537

(partial model without unconserved sides chains):
PDB file : Tito_3GIE.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3GIE-query.scw
PDB file : Tito_Scwrl_3GIE.pdb: