Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTGTATTRRRLLAVLIALALPGAA-----VALLAEPSATGASDPCAASEVARTVGSVAKSMGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASDLHALSQPLTDLSTRCSLPISGLQAIGLMQAVQGARR
4GTZ Chain:A ((242-332))
---GSVPFEERILAVLEWLQLPSHERPHFYTLYLEEPDSSGHSHGPVSSEVIKALQKVDRLVGMLMD--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4GTZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2645 for 300 contacts (-8.8/contact) +
2D Compatibility (PS) -6243 + (NN) -2697 + (LL) 5208
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -11777.0 ( -39.26 by residue)
QMean score : 0.086
(partial model without unconserved sides chains):
PDB file :
Tito_4GTZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GTZ-query.scw
PDB file :
Tito_Scwrl_4GTZ.pdb
: