Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQPTPSDTDQQQALEAFLRDGG----TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKDRAYESDNA
4NRH Chain:B ((26-167))
-----PFPDDLESYLEGYVPDKNIALDTYQKIFKISSEDLEKVYKEGYHAYLDKDYAKSITVFRWLVFFNPFVSKFWFSLGASLHMSEQYSQALHAYGVTAVLRDKDPYPHYYAYICYTLTNEHEEAEKALEMAWVRAQHKPLYNELKEEILDIRK---------------
General information:
TITO was launched using:
RESULT:
Template:
4NRH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58242 for 1024 contacts (-56.9/contact) +
2D Compatibility (PS) -14758 + (NN) -6151 + (LL) 1848
1D Compatibility (HY) -8400 + (ID) 1600
Total energy: -87303.0 ( -85.26 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_4NRH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NRH-query.scw
PDB file :
Tito_Scwrl_4NRH.pdb
: