Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV
3N8M Chain:A ((3-101))
------------------------------------------------------MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQ----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3N8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60125 for 668 contacts (-90.0/contact) +
2D Compatibility (PS) -10711 + (NN) -7100 + (LL) 5792
1D Compatibility (HY) -13600 + (ID) 4950
Total energy: -90694.0 ( -135.77 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_3N8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N8M-query.scw
PDB file :
Tito_Scwrl_3N8M.pdb
: