Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYEKVE
1PMP Chain:A ((6-131))
--------GTWKLVSSENFDEYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTESPFKNTEISFKLGQEFEETTADNRKTKSTVTLARGSLNQVQKWNGNETTIKRKLVDGKMVVECKMKDVVCTRIYEKV-
General information:
TITO was launched using:
RESULT:
Template:
1PMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28965 for 869 contacts (-33.3/contact) +
2D Compatibility (PS) -14349 + (NN) -3771 + (LL) 1220
1D Compatibility (HY) -12800 + (ID) 3700
Total energy: -62365.0 ( -71.77 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_1PMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PMP-query.scw
PDB file :
Tito_Scwrl_1PMP.pdb
: