Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
1DOA Chain:A ((4-137))
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
General information:
TITO was launched using:
RESULT:
Template:
1DOA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73834 for 928 contacts (-79.6/contact) +
2D Compatibility (PS) -14386 + (NN) -9903 + (LL) 0
1D Compatibility (HY) -20800 + (ID) 6700
Total energy: -125623.0 ( -135.37 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_1DOA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DOA-query.scw
PDB file :
Tito_Scwrl_1DOA.pdb
: