Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
1G4U Chain:R ((1-180))
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP-----------
General information:
TITO was launched using:
RESULT:
Template:
1G4U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129166 for 1391 contacts (-92.9/contact) +
2D Compatibility (PS) -19695 + (NN) -7411 + (LL) 864
1D Compatibility (HY) -24000 + (ID) 6450
Total energy: -185858.0 ( -133.61 by residue)
QMean score : 0.734
(partial model without unconserved sides chains):
PDB file :
Tito_1G4U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4U-query.scw
PDB file :
Tito_Scwrl_1G4U.pdb
: