Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM
1CLU Chain:A ((1-166))
MTEYKLVVVGAPGVGKSALTIQLIQNHFVDE------DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1CLU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105417 for 1300 contacts (-81.1/contact) +
2D Compatibility (PS) -17979 + (NN) -9568 + (LL) 1164
1D Compatibility (HY) -21600 + (ID) 7150
Total energy: -160550.0 ( -123.50 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_1CLU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CLU-query.scw
PDB file :
Tito_Scwrl_1CLU.pdb
: