Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALKSLVLLSLLVLVLLLVRVQPSLGKETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
8RSA Chain:B ((1-124))
--------------------------KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
General information:
TITO was launched using:
RESULT:
Template:
8RSA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40807 for 901 contacts (-45.3/contact) +
2D Compatibility (PS) -13727 + (NN) -7568 + (LL) 3136
1D Compatibility (HY) -14000 + (ID) 6200
Total energy: -79166.0 ( -87.86 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_8RSA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-8RSA-query.scw
PDB file :
Tito_Scwrl_8RSA.pdb
: