Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
3KAB Chain:A ((11-167))
------LPPGWEKAMSRSSGRVYYFNHITNASQWERPS------------EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
General information:
TITO was launched using:
RESULT:
Template:
3KAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24755 for 1093 contacts (-22.6/contact) +
2D Compatibility (PS) -15643 + (NN) -10155 + (LL) -372
1D Compatibility (HY) -15600 + (ID) 7200
Total energy: -73725.0 ( -67.45 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_3KAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KAB-query.scw
PDB file :
Tito_Scwrl_3KAB.pdb
: