Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
4HNJ Chain:A ((4-199))
MSQSNRELVVDFLSYKLSQKGYSW--------------------------------------------------------IPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4HNJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41457 for 772 contacts (-53.7/contact) +
2D Compatibility (PS) -15142 + (NN) -5326 + (LL) 4456
1D Compatibility (HY) -22000 + (ID) 7000
Total energy: -86469.0 ( -112.01 by residue)
QMean score : 0.239
(partial model without unconserved sides chains):
PDB file :
Tito_4HNJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HNJ-query.scw
PDB file :
Tito_Scwrl_4HNJ.pdb
: