Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKAKSHAPEVITSSPLK
1LPZ Chain:B ((1-234))
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKT--------------------
General information:
TITO was launched using:
RESULT:
Template:
1LPZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145539 for 2045 contacts (-71.2/contact) +
2D Compatibility (PS) -25504 + (NN) -8614 + (LL) 852
1D Compatibility (HY) -32000 + (ID) 11700
Total energy: -222505.0 ( -108.80 by residue)
QMean score : 0.727
(partial model without unconserved sides chains):
PDB file :
Tito_1LPZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LPZ-query.scw
PDB file :
Tito_Scwrl_1LPZ.pdb
: